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SRX1427720: GSM1937995: dCas9-BFP-DNMT3B; Homo sapiens; RNA-Seq
1 ION_TORRENT (Ion Torrent Proton) run: 40.3M spots, 5.4G bases, 4Gb downloads

Submitted by: NCBI (GEO)
Study: Inhibition of uPA expression by CRISPR-dCas9 DNA methyltransferases
show Abstracthide Abstract
We report the generation of CRISPR-dCas9 DNA methyltransferases to mediate targeted DNA methylation. Using the dCas9-BFP-DNMT3A and dCas9-BFP-DNMT3B methyltransferases, we have demonstrated that these two methyltransferase can mediate targeted methylation in three human genes tested: uPA, TGFBR3, and CDKN2A in human HEK293T cells. We also showed that these methyltransferases could mediate gene inhibition. Overall design: five samples co-transfected with five uPA sgRNAs and each of the four dCas9 fusions, or control transfection with pUC19 plasmid
Sample: dCas9-BFP-DNMT3B
SAMN04261750 • SRS1159127 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Ion Torrent Proton
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted using the RNeasy Plus Mini kit (QIAGEN) After DNase I treatment, mRNA were isolated by magnetic beads with Oligo (dT). Mixed with the fragmentation buffer, mRNA were fragmented into short fragments. cDNA was synthesized using the mRNA fragments as templates, resolved with EB buffer for end reparation and ligated with adapters. After size selected and purified by agarose gel electrophoresis, cDNA with sizes about 240 bp were selected for PCR amplification (12 cycles) and library construction.
Experiment attributes:
GEO Accession: GSM1937995
Links:
Runs: 1 run, 40.3M spots, 5.4G bases, 4Gb
Run# of Spots# of BasesSizePublished
SRR292033840,325,6125.4G4Gb2016-06-01

ID:
2020445

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